Improvements, spells, champions, border not contiguous, occupation penalty, city count penalty are listed separatly, everything else that affects your entire faction is subsumed under the faction wide unrest.
For example: "Noble" Sovereign Profession (-10), "Rebel" faction weakness (+10), "Apiaries" on a Twilight Bee resource (-2), "Prison" lvl 4 Fortress upgrade (-10), "Obsidian Throne" lvl 5 Fortress upgrade (-30)