You should be able to stop the shortcut being created on first login in one of two ways.
1) Set on a per account basis the following registry key :
Location : HKEY_CURRENT_USER\Software\Stardock\Start8\Start8.ini\Start8
Key : DoNotCreateWin8Link
Value : 1 (store as a REG_SZ)
or
2) Set on a per machine basis using the following registry key :
Location : HKEY_LOCAL_MACHINE\Software\Stardock\Start8\Start8.ini\Start8
Key : DoNotCreateWin8Link
Value : 1 (store as a REG_SZ)
Note that once the shortcut has been created there is no Start8 setting to remove it, though deleting the windows 8 menu.lnk from the usual pinned shortcuts folder would also do the trick.
As you are installing it on remote desktop servers, obviously please do make sure you have sufficient licenses.