No No No and NOOOOO !!!!
While the idea seems fun to me, the idea would ruin the game because the player would be free to do whatever he wants ! Oh you just gave me a million credit ? I'm going to attack you, not the target you want me to ! Their entire economy would be based of players or / and own and it would be a mess ! If a player controls it, why do we need to give them money? What is the purpose of helping a player that will come destroy your planets and colonize them? What about their tech tree? They would be able to travel directly with huge armies since the begining of the game, if yes it would be way too powerful, if no, what's the purpose?
Their purpose is that they are neutral, they don't attack unless the bet begins on players.
Also, their role is to "harrass" players, if a player control them, it won't be harrassment but he will clearly come to kick your *** ! It would not be fun anymore !
I don't think a player would be neutral enough while controlling them !